PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872724.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 130aa    MW: 14920.3 Da    PI: 11.06
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872724.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.7e-08249448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                     WT  E   lvd++ ++G g+W+ I r +      Rt+ +++++w+++l
   XP_015872724.1  2 WTLTEVMNLVDGISEYGVGRWTDIKRLLFaasAYRTPIDLRDKWRNLL 49
                     ********************************99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd116605.32E-17150No hitNo description
PROSITE profilePS5129415.021153IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-10250IPR009057Homeodomain-like
SuperFamilySSF466897.8E-16264IPR009057Homeodomain-like
PfamPF002496.6E-6249IPR001005SANT/Myb domain
SMARTSM007176.9E-5251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MWTLTEVMNL VDGISEYGVG RWTDIKRLLF AASAYRTPID LRDKWRNLLR ASCAHKLKKK  60
EMEERQGHAV RPLPKSLLRR VRELAKIHPY PRERGVKSIG EDDPSTLPTS SKGAPLSVGR  120
KNNVRRKNCT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015869362.16e-92PREDICTED: telomere repeat-binding protein 4-like
RefseqXP_015869831.16e-92PREDICTED: telomere repeat-binding protein 4-like
RefseqXP_015869840.18e-91PREDICTED: uncharacterized protein LOC107407122, partial
RefseqXP_015869952.12e-89PREDICTED: uncharacterized protein LOC107407213
RefseqXP_015870547.16e-92PREDICTED: telomere repeat-binding protein 4-like
RefseqXP_015870564.16e-92PREDICTED: telomere repeat-binding protein 4-like
RefseqXP_015870568.16e-92PREDICTED: telomere repeat-binding protein 4-like
RefseqXP_015872539.16e-92PREDICTED: telomere repeat-binding protein 4-like
RefseqXP_015872724.13e-92PREDICTED: telomere repeat-binding protein 2-like
TrEMBLW9S5278e-52W9S527_9R
STRINGVIT_08s0040g01640.t019e-51(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-22TRF-like 6